"Dark lines" aka "Ghost Lines" aka "Washboard lines" anomalies show up in side scanning images most commonly in examples of side scan images captured while using an xducer that has both "side pointing" SI piezoes and a "down pointing" DI piezo ...
LSS 1

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LSS 2 (not as prominent but still there)...

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Onix

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Garmin
Overlapping slice beams create an effect similar to this beam form example which end up showing in the SI image as the dark lines ...
Rickie