If you hook up both trolling batterys to one bank wired like WB says...Yes it will charge but heres the problem......If one battery is weaker than the other one...then your are going to be over charging the strong one because the charger will not shut off untill both batterys are charged. That is why you want a separate bank hooked to each battery. The best way to charges and protect and prolong your batterys is to use one of the two options that I suggested. Been there and done that, Lol.

